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Workshops/JobCheckpointing/Examples/Python: [[PageOutline]] = Python Checkpointing Example = == Checkpoint ...: ... For file editing with nano, etc., see [[https://wiki.hpc.tulane.edu/trac/wiki/cypress/FileEditingSoftware/Example|File Editing Example]]. 2. Submit the job via the following command. {{{ [tulaneID@cypress1 ~]$ CKPT_PATH=state_iter_py.txt sbatch checkpoint_runner.sh }}} ...; By Carl Baribault — 03/20/2026 01:48:46 PM
Workshops/JobCheckpointing/Examples/BASH: [[PageOutline]] = BASH Checkpointing Example = == Checkpoint ...: ... For file editing with nano, etc., see [[https://wiki.hpc.tulane.edu/trac/wiki/cypress/FileEditingSoftware/Example|File Editing Example]]. 2. Change permissions on the BASH application script, '''checkpoint_signal_iter.sh''' executable via the following command. {{{ [tulane ...; By Carl Baribault — 03/20/2026 01:45:57 PM
Workshops/JobCheckpointing: [[PageOutline]] = HPC Workshop Spring 2026 = = Module 8 of 8 - Job ...: ... (See "backfill scheduling" in [https://slurm.schedmd.com/sched_config.html|SLURM Scheduling Configuration Guide]. * '''More checkpointed jobs can run simultaneously''' due to strict limits enforced by Cypress, LONI, and most other production clusters. * See see '''--q ...; By Carl Baribault — 03/13/2026 09:41:26 PM
cypress/about: [[PageOutline]] == About Cypress == Cypress is Tulane's newest ...: ... [https://tulane.service-now.com/tulaneit?id=sc_cat_item_guide&sys_id=82de37a91b18fa9080b264a2604bcb9a&sysparm_category=8d648d93dbc44c10f460562bdc9619ad HPC & Globus Request (Bundle)] to request an account. After logging in with your Tula ...; By Carl Baribault — 03/13/2026 09:36:41 PM
cypress/software: = Available Software = [[cypress/ModuleCommand|'module]] command ...: ... ||https://www.mathworks.com/products/matlab.html||commercial (site license)||R2017b, R2020a, R2023a||R2024b|| ||R||software environment for statistical computing and graphics||https://www.r-project.org/||Public||3.1.2, 3.5.2, 3.6.1, 4.1.0, 4 ...; By Carl Baribault — 02/19/2026 11:08:00 PM
cypress/Globus: [[PageOutline]] = Globus = [https://www.globus.org Globus] is a ...: [[PageOutline]] = Globus = [https://www.globus.org Globus] is a research cyberinfrastructure, developed and operated as a not-for-profit service by the University of Chicago. With Globus, you can easily, reliably, and securely move, share, & discover data no matter wh ...; By Carl Baribault — 02/09/2026 02:16:38 PM
cypress/RunningRStudioWithSingularity: [[PageOutline]] = Running RStudio with Singularity on Cypress = == ...: ... For more information about these matters see https://www.gnu.org/licenses/. [tulaneID@cypress01-060 ~]$ }}} == Alternative for tidyverse == As an alternative to just the base RStudio container, you can construct the container image file '''tidyverse_latest.sif''' and run RStud ...; By Carl Baribault — 02/05/2026 04:34:28 PM
Workshops/JobParallelism/WhileYourJobIsRunning: [[PageOutline]] = While your job is running - determining current ...: ... {{{ [tulaneID@cypress1 ~]$git clone https://hidekiCCS:@bitbucket.org/hidekiCCS/hpc-workshop.git [tulaneID@cypress1 ~]$cp -r hpc-workshop/R/* . [tulaneID@cypress1 ~]$ls bootstrap.R bootstrap.sh bootstrapWargs.R bootstrapWargs.sh myRscript.R slurmscript1 slurmscript2 ...; By Carl Baribault — 01/21/2026 11:53:30 AM
cypress/Singularity: [[PageOutline]] = Singularity = '''The current installation of ...: ... ''' == About Singularity == [https://sylabs.io/ Singularity] allows you to create and run containers that package up pieces of software in a way that is portable and reproducible. You can build a container using Singularity on your laptop, and then run it on many of ...; By Carl Baribault — 01/20/2026 11:03:07 AM
cypress/SingularityDockerhub: [[PageOutline]] = Build Singularity Containers from Dockerhub = ...: ... Build Singularity Containers from Dockerhub = [https://www.docker.com/ Docker] is a container virtualization environment that can establish development or runtime environments without modifying the environment of the base operating system. It runs on Mac and Windows. == Use CentOS 7 ...; By Carl Baribault — 01/19/2026 10:45:17 PM

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