| 70 | | == Tulane High Performance Computing Workshops == |
| 71 | | * [[cypress/IntroToHpcWorkshop2015 | Intro to HPC workshop 2015]] |
| | 72 | == Topics == |
| | 73 | |
| | 74 | |
| | 75 | === Introduction to Tulane computing resources === |
| | 76 | * [[cypress/workshopintro|High Performance Computing at Tulane]] |
| | 77 | |
| | 78 | === Working on a remote !Unix/Linux system === |
| | 79 | * [[cypress/SshUsage/|SSH, terminal software]] |
| | 80 | * [[cypress/BasicLinuxComands|Unix/Linux commands]] |
| | 81 | * [[cypress/FileEditingSoftware|File Editing Software]] |
| | 82 | * [[cypress/FileTransfer|File transfer to/from your desktop/laptop]] |
| | 83 | * [[cypress/WorkingOnClusters|Working on a remote Unix/Linux Cluster]] |
| | 84 | * [[cypress/ModuleCommand|Module command]] |
| | 85 | * [[cypress/using#SubmittingJobsonCypress|How to submit a job]] |
| | 86 | * [[cypress/using#SubmittingInteractiveJobs|Running interactive jobs (idev)]] |
| | 87 | |
| | 88 | |
| | 89 | |
| | 90 | === How to run a Matlab code on Cypress === |
| | 91 | * [[cypress/Matlab#RunningMATLABinteractively|Running Matlab interactively using idev]] |
| | 92 | * [[cypress/Matlab#RunningMATLABinabatchmode|Running Matlab jobs using SLURM scripts]] |
| | 93 | * [[cypress/Matlab#RunningMATLABinParallelwithMultithreads|Parallel Matlab]] |
| | 94 | |
| | 95 | |
| | 96 | === How to run R code on Cypress === |
| | 97 | * [[cypress/R|Running R on Cypress]] |
| | 98 | |
| | 99 | === How to run Python Cypress=== |
| | 100 | * [[cypress/Python|Running Python on Cypress]] |
| | 101 | |
| | 102 | |
| | 103 | === Coding === |
| | 104 | * [[cypress/Programming|Programing in C/C++/Fortran]] |
| | 105 | * [[cypress/Programming/SpeedupScaling|Parallel Computing Overview]] |
| | 106 | * [[cypress/Programming/OpenMp|Shared Memory]] |
| | 107 | * [[cypress/Programming/Mpi|Distributed Memory]] |
| | 108 | |
| | 109 | |
| | 110 | === Version control === |
| | 111 | * [[cypress/svn|svn]] |
| | 112 | * [[cypress/git|git]] |
| | 113 | |
| | 114 | |
| | 115 | === Compilation, debugging, and optimization === |
| | 116 | * [[cypress/Programming/MakeFile|Makefiles]] |
| | 117 | * [[cypress/Programming/CodeDebugging|Code Debugging]] |
| | 118 | * [[cypress/Programming/CodeProfiling|Code Profiling]] |
| | 119 | * [[cypress/Programming/CodeDebugging#GDB|gdb]] |
| | 120 | * [[cypress/Programming/CodeDebugging#Valgrind|valgrind]] |
| | 121 | * [[cypress/Programming/CodeDebugging#IntelInspectorXE|Intel Parallel Studio XE (Inspector, Advisor, and Vtune)]] |
| | 122 | |
| | 123 | === Math Libraries === |
| | 124 | * [[BLAS]] |
| | 125 | * [[cypress/LAPACK|LAPACK]] |
| | 126 | * [[cypress/MKL|MKL]] |
| | 127 | |
| | 128 | === Intel’s Xeon Phi Coprocessor === |
| | 129 | * [[cypress/XeonPhi|Review of Hardware from previous day]] |
| | 130 | * [[cypress/XeonPhi#XeonPhiUsageModels|Three usage paradigms]] |
| | 131 | * [[cypress/XeonPhi|Programming considerations]] |
| | 132 | |
| | 133 | === Data Visualization === |
| | 134 | * [[cypress/VisIt|VisIt]] |
| | 135 | * [[cypress/Visualization Toolkit (VTK)|Visualization Toolkit (VTK)]] |
| | 136 | |
