Changes between Version 3 and Version 4 of cypress/RunningRStudioWithSingularity


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Timestamp:
02/05/26 16:16:26 (2 days ago)
Author:
Carl Baribault
Comment:

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  • cypress/RunningRStudioWithSingularity

    v3 v4  
    22= Running RStudio with Singularity on Cypress =
    33
    4 == Login using port forwarding ==
     4== Login to Cypress using port forwarding ==
    55
    66See for example [wiki:JupyterNode Jupyter notebook].
     
    1212== Start the interactive session - with port forwarding ==
    1313
    14 First, start an interactive session.
     14First, start an interactive session, but this time you'll need to include port forwarding in order to connect to the RStudio server running on the compute node from your browser on your local machine.
    1515
    1616'''For Workshop''' :
     
    9696 * Go to your browser
    9797
     98 You can now use the RStudio server web interface on your browser.
    9899
    99 You can now use the RStudio interface on your browser.
     100 Using the above, now that you have the RStudio server running in your Cypress interactive session, open a browser window or tab on your local machine and type the following.
    100101
    101 Using the above, now that you have the RStudio server running in your Cypress interactive session, open a browser window or tab on your local machine and type the following.
    102 
    103 Be sure to match your choice of local port number from above, substituting for '''8888''' as needed.
     102 Be sure to match your choice of local port number from above, substituting your choice for '''8888''' as needed.
    104103
    105104{{{
     
    107106}}}
    108107
    109  * Use RStudio in your browser
     108 * Use RStudio server web interface in your browser
    110109
    111 Here is RStudio starting in your browser.
     110 Shown below is RStudio server web interface loading in your browser.
    112111
    113 Note that this and all future responses may be slow due to your particular network latency.
     112 Note that this and all future graphical responses to your actions in the browser may be slow due to your particular network latency.
    114113
    115114[[Image(RStudioInBrowserStartup.png, center, 30%)]]
    116115
    117 Here is RStudio interface finished loading in your browser.
     116----
    118117
    119 Note that all of your previously installed R packages should also available in your RStudio's R session.
     118 Shown below is RStudio server web interface finished loading in your browser.
    120119
    121 See [wiki:InstallingRPackages Installing R Packages on Cypress].
     120 Note that all of your previously installed R packages should also available in your RStudio's R session.
     121
     122 See [wiki:InstallingRPackages Installing R Packages on Cypress].
    122123
    123124[[Image(RStudioInBrowserRunning.png, center, 30%)]]
    124125
    125 When you're done, go to '''File''' -> '''Quit Session...''' , then simply close the browser tab.
     126----
     127
     128 When you're done, go to '''File''' -> '''Quit Session...''' , then with '''R Session Ended''' showing, simply close the browser tab.
    126129
    127130[[Image(RStudioInBrowserEnded.png, center, 30%)]]