HPC Workshop 2018

1. Introduction to Tulane computing resources

​https://crsc.tulane.edu/cypress-schematic/
​https://crsc.tulane.edu/hardware-specifications/

2. Working on a remote Unix/Linux system, Part I

• SSH, terminal software
• Unix/Linux commands

Break - Coffee & Refreshments Provided

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3. Working on a remote Unix/Linux system, Part II

• File Editing Software
• File transfer to/from your desktop/laptop
• Working on a remote Unix/Linux Cluster

4. Working on a remote Unix/Linux system, Part III

• Module command
• How to submit a job

Break - Lunch Provided

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5. Serial, Parallel, Array, Interactive jobs

• cypress/using#MPIJobs Parallel Jobs : MPI
• cypress/using#OpenMPJobs Parallel Jobs : OpenMP
• cypress/using#HybridJobs Parallel Jobs : Hybrid Jobs
• cypress/using#RunningMannySerialJobs : Job Arrays
• Running interactive jobs (idev)

6. How to run R code on Cypress

• Running R on Cypress
• Running R Interactively
• Running R with Batch Mode
• Install Packages

Afternoon Break

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7. How to run Python Cypress

• Running Python on Cypress
• Running Python Interactively
• Running Python with Batch Mode
• Jupyter Notebook
• Install Packages to Anaconda Python

Download Samples by:

svn co file:///home/fuji/repos/workshop ./workshop

Checkout Sample Programs onto local machine, (linux shell)

svn co svn+ssh://USERID@cypress1.tulane.edu/home/fuji/repos/workshop ./workshop