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cypress/SingularityDockerhub: [[PageOutline]] = Build Singularity Containers from Dockerhub = ...
... Build Singularity Containers from Dockerhub = [https://www.docker.com/ Docker] is a container virtualization environment that can establish development or runtime environments without modifying the environment of the base operating system. It runs on Mac and Windows. == Use CentOS 7 ...
By cbaribault — 08/21/25 11:53:02
cypress/SingularityRecipes: = Build Singularity Containers from Recipes = Because you do not have ...
... * You can build a Singularity container from a recipe on [https://cloud.sylabs.io/builder Sylabs Cloud]. * Then download the resulting .sif file to Cypress from the cloud with the bash command '''wget'''. (See '''man wget'''.) == Build on Your Local Machine == * You could build a Linux machine ...
By cbaribault — 08/21/25 11:34:23
cypress/Singularity: [[PageOutline]] = Singularity = '''The current installation of ...
... ''' == About Singularity == [https://sylabs.io/ Singularity] allows you to create and run containers that package up pieces of software in a way that is portable and reproducible. You can build a container using Singularity on your laptop, and then run it on many of th ...
By cbaribault — 08/21/25 09:52:37
WikiStart: [[PageOutline]] == HPC at Tulane University == The Tulane ...
... = Tulane High Performance Computing Workshops == [[https://tulane.yuja.com/V/PlayList?node=59239867&a=1102289631|Playlist of recordings for workshops from Fall 2025 Onward]] === Fall 2025 HPC Workshop Modules === * [[https://wiki.hpc.tulane.edu/trac/wiki/Workshops/IntroToHpc2025August ...
By cbaribault — 08/20/25 11:50:33
cypress/AnacondaInstallPackage: ==== Install Packages to Anaconda Python ==== For this example, we ...
... (For more information, see [https://conda.io/projects/conda/en/latest/user-guide/troubleshooting.html#conda-reports-that-a-package-is-installed-but-it-appears-not-to-be here].) In particular, if you encounter errors during python module import, then you should unse ...
By cbaribault — 08/20/25 10:58:03
cypress/R: [[PageOutline]] = Running R on Cypress = == About R == "R is ...
... " (See https://cran.r-project.org/.) == R Modules == You can list the versions of R available on Cypress as modules with the '''module avail''' command as in the following example, including the "/" character to show only R modules. {{{ [t ...
By cbaribault — 08/19/25 14:50:13
cypress/JupyterNode: == Jupyter Notebook == The ​[https://jupyter.org/ Jupyter Notebook] ...
== Jupyter Notebook == The ​[https://jupyter.org/ Jupyter Notebook] is a web application that allows you to create and share documents that contain live code, equations, visualizations, and explanatory text. 1. Login to Cypress with port-forwarding {{{ [user@local ...
By fuji — 08/19/25 13:12:17
Workshops/HowToRunPythonOnCypress2025August: [[PageOutline]] = HPC Workshop Fall 2025 = = Module 3 of 5 - How to ...
... * [https://www.python.org/ Python] === Python 2 or 3 === Python 3 was incompatible with Python 2. ==== Python2 ==== The last version of Python 2, released in 2010, was Python 2.7. The support for this version ended on January 1, 2020. ...
By fuji — 08/18/25 15:18:35
cypress/Python: [[PageOutline]] = Running Python on Cypress = == Python Modules ...
... te list of packages available though Anaconda can be found [https://anaconda.org/anaconda/repo here]. ==== Install Packages to Anaconda Python ==== If you want to use some package but Anaconda on Cypress doesn't have it, you can install it on your home directory. See [[AnacondaInstallPackage| ...
By fuji — 08/18/25 14:54:29
cypress/GNUparallel: [[PageOutline]] = GNU Parallel = GNU parallel is a shell tool for ...
... ::: ARGFILE }}} [https://www.gnu.org/software/parallel/parallel_tutorial.html] == Many Task Computing == If you haven't done yet, download Samples by: {{{ git clone https://hidekiCCS:@bitbucket.org/hidekiCCS/hpc-workshop.git }}} For example, you h ...
By fuji — 08/16/25 17:17:56
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