Changes between Version 4 and Version 5 of cypress/WGSA

Timestamp:

07/15/20 22:15:54 (4 years ago)

Author:

fuji

Comment:

—

cypress/WGSA

@@ -123 +123 @@
 }}}
 Go through the steps of the installing process and following the guidance at http://useast.ensembl.org/info/docs/tools/vep/script/vep_tutorial.html. When being asked for the cache files, choose “242 : homo_sapiens_merged_vep_94_GRCh37.tar.gz”. When being asked for fasta files, choose “27 : homo_sapiens”. When being asked for the plugins, choose "7:LOF". The fasta file downloading is required for the current version of WGSA.
+
+*This takes very long time...
+
 {{{
 perl INSTALL.pl -c $WGSA_DIR/.vep --ASSEMBLY GRCh38
 }}}
 When being asked for the cache files, choose "243 : homo_sapiens_merged_vep_94_GRCh38.tar.gz". When being asked for fasta files, choose “54: homo_sapiens”. When being asked for the plugins, choose "n" as LOF has already been installed.
+
+*This takes very long time...
+
+Change the permissions for these directories...
 {{{
 chmod 777 $WGSA_DIR/.vep/Plugins