Changes between Version 4 and Version 5 of cypress/WGSA


Ignore:
Timestamp:
Jul 15, 2020 10:15:54 PM (18 months ago)
Author:
fuji
Comment:

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  • cypress/WGSA

    v4 v5  
    123123}}}
    124124Go through the steps of the installing process and following the guidance at http://useast.ensembl.org/info/docs/tools/vep/script/vep_tutorial.html. When being asked for the cache files, choose “242 : homo_sapiens_merged_vep_94_GRCh37.tar.gz”. When being asked for fasta files, choose “27 : homo_sapiens”. When being asked for the plugins, choose "7:LOF". The fasta file downloading is required for the current version of WGSA.
     125
     126*This takes very long time...
     127
    125128{{{
    126129perl INSTALL.pl -c $WGSA_DIR/.vep --ASSEMBLY GRCh38
    127130}}}
    128131When being asked for the cache files, choose "243 : homo_sapiens_merged_vep_94_GRCh38.tar.gz". When being asked for fasta files, choose “54: homo_sapiens”. When being asked for the plugins, choose "n" as LOF has already been installed.
     132
     133*This takes very long time...
     134
     135Change the permissions for these directories...
    129136{{{
    130137chmod 777 $WGSA_DIR/.vep/Plugins