Changes between Version 7 and Version 8 of cypress/SingularityDockerhub

Timestamp:

08/20/25 15:53:32 (14 hours ago)

Author:

cbaribault

Comment:

Added setup info, adjusted titles

cypress/SingularityDockerhub

@@ -21 +21 @@
 }}}
 
+== Building a container for Ubuntu ==
+
 Load the module, 
 {{{
@@ -37 +39 @@
 }}}
 
+For convenience, we've already done the above for you as well as providing access to LUSTRE, etc., when you perform the following.
+
+{{{
+source /lustre/project/singularity_images/setup_cypress.sh
+}}}
+
+Here's what the file setup_cypress contains.
+
+{{{
+cat /lustre/project/singularity_images/setup_cypress.sh
+# Set $TMPDIR in containar to /tmp, keeping $TMPDIR in host (/local/tmp/...)
+export SINGULARITYENV_TMPDIR=/tmp
+# Mount the lustre directory to home, $TMPDIR to /tmp
+export SINGULARITY_BINDPATH=/cm:/cm,/share:/share,/lustre:/lustre,/home:/home,$TMPDIR:/tmp
+}}}
+ 
 By default, the cache is stored in ~/.singularity; this location can be customized using the environmental variable SINGULARITY_CACHEDIR. A subcommand, singularity cache, can be used to manage the cache.
 
-=== Example : [https://github.com/moshi4/FastDTLmapper FastDTLmapper] ===
+== Example : [https://github.com/moshi4/FastDTLmapper FastDTLmapper] ==
 This tool depends on many python packages and requires both python2 and python3. Fortunately, the developer provides Docker Images so we can use it to generate a Singularity image.