Changes between Version 1 and Version 2 of cypress/STATA-Singularity

Timestamp:

09/18/2026 09:55:06 AM (45 hours ago)

Author:

fuji

Comment:

--

cypress/STATA-Singularity

@@ -6 +6 @@
 
 Start an interactive session on the CentOS7 partition,
+
 {{{#!bash
 [uid@cypress2 ~]$ idev --partition=centos7
@@ -17 +18 @@
 Last login: Mon Jun  8 20:18:50 2015 from cypress1.cm.cluster
 }}}
+
 The default `idev` session reserves a node for '''one hour'''. If you want to work on it for a longer time, use `-t` option. See [[cypress/using#SubmittingInteractiveJobs]].
 
 Load the module
+
 {{{#!bash
 [uid@cypress01-066 ~]$ module load singularity
 }}}
+
 Set up the environment and run Rocky Linux with Singularity.
+
 {{{#!bash
 [uid@cypress01-066 ~]$ source $SingularityImageDir/setup_cypress.sh
 [uid@cypress01-066 ~]$ singularity shell -s /bin/bash $SingularityImageDir/rockylinux-9.2.sif
 }}}
+
 You will get a command line prompt, `Apptainer>`.
-Assuming `stata` is in your $PATH directory, run STATA on the command line,
+
+Add `stata` directory to your $PATH if you haven't done so yet.
+
+{{{#!bash
+export PATH=$PATH:<your STATA directory>
+}}}
+
+Run STATA on the command line,
+
 {{{#!bash
 Apptainer> stata
@@ -88 +102 @@
 
 # SET YOUR STATA DIRECTORY
-STATA_DIR=/lustre/project/eisaac/opt/stata19
+STATA_DIR=<your STATA directory>
 
 # RUN STATA
@@ -105 +119 @@
 
 
-Stata can run with multiple threads. You can check the license info by 'creturn list' command on stata-window.
+Stata can run with multiple threads. You can check the license info by the 'creturn list' command in Stata.
 
 {{{
@@ -115 +129 @@
 {{{#!bash
 #!/bin/bash
-#SBATCH --partition=defq        # Partition
+#SBATCH --partition=centos7     # Partition
 #SBATCH --qos=normal            # Quality of Service
-#SBATCH --job-name=STATA        # Job Name
+#SBATCH --job-name=STATA-mp     # Job Name
 #SBATCH --time=24:00:00         # WallTime
 #SBATCH --nodes=1               # Number of Nodes
@@ -124 +138 @@
 #SBATCH --gres=mic:0            # Number of Co-Processors
 
-module load stata
+# SETUP SINGULARITY
+module load singularity
+source $SingularityImageDir/setup_cypress.sh
 
-stata-mp -b do parappelcode
+# SET YOUR STATA DIRECTORY
+STATA_DIR=<your STATA directory>
+
+# RUN STATA
+singularity exec $SingularityImageDir/rockylinux-9.2.sif $STATA_DIR/stata-mp -b do parallelcode
+
 }}}