https://github.com/weizhouUMICH/SAIGE

idev
module load R/4.1.0-intel libgit2/1.1.0
module load anaconda3/2020.07
export CONDA_ENVS_PATH=/home/zhuang10/Conda_env
unset PYTHONPATH
source activate saige
conda install -c conda-forge cget
conda install -c conda-forge bgen
conda install -c conda-forge -c bioconda savvy

R
install.packages('gert')
install.packages('usethis')
install.packages('devtools')
library(devtools)
devtools::install_github("leeshawn/MetaSKAT")
tmp<-file.path(tempdir())
devtools::install_github("weizhouUMICH/SAIGE", lib = tmp)