Changes between Initial Version and Version 1 of cypress/SAIGE


Ignore:
Timestamp:
09/30/21 18:07:15 (3 years ago)
Author:
fuji
Comment:

—

Legend:

Unmodified
Added
Removed
Modified

  • cypress/SAIGE

    v1 v1  
     1https://github.com/weizhouUMICH/SAIGE
     2
     3idev
     4module load R/4.1.0-intel libgit2/1.1.0
     5module load anaconda3/2020.07
     6export CONDA_ENVS_PATH=/home/zhuang10/Conda_env
     7unset PYTHONPATH
     8source activate saige
     9conda install -c conda-forge cget
     10conda install -c conda-forge bgen
     11conda install -c conda-forge -c bioconda savvy
     12
     13R
     14install.packages('gert')
     15install.packages('usethis')
     16install.packages('devtools')
     17library(devtools)
     18devtools::install_github("leeshawn/MetaSKAT")
     19tmp<-file.path(tempdir())
     20devtools::install_github("weizhouUMICH/SAIGE", lib = tmp)
     21