Changes between Version 17 and Version 18 of cypress/R


Ignore:
Timestamp:
08/21/19 16:22:31 (5 years ago)
Author:
cbaribault
Comment:

Updated to include R/3.5.2-intel, etc.

Legend:

Unmodified
Added
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Modified

  • cypress/R

    v17 v18  
    44
    55== R Modules ==
    6 As of July 31st, 2017 there are five versions of R installed on Cypress in the modules
     6As of June 7, 2019 the following versions of R are available on Cypress as modules.
    77
    88* R/3.1.2(default)
    … …  
    1111* R/3.3.1-intel
    1212* R/3.4.1-intel
     13* R/3.5.2-intel
    1314
    1415== Running R Interactively ==
    … …  
    2425
    2526{{{
    26 [tulaneID@cypress1 pp-1.6.4]$ idev
    27 Requesting 1 node(s)  task(s) to normal queue of defq partition
     27[tulaneID@cypress1 ~]$ idev
     28Requesting 1 node(s)  task(s) to workshop queue of workshop partition
    28291 task(s)/node, 20 cpu(s)/task, 2 MIC device(s)/node
    2930Time: 0 (hr) 60 (min).
    30 Submitted batch job 52311
    31 Seems your requst is pending.
    32 JOBID=52311 begin on cypress01-035
    33 --> Creating interactive terminal session (login) on node cypress01-035.
     31Submitted batch job 1164332
     32JOBID=1164332 begin on cypress01-121
     33--> Creating interactive terminal session (login) on node cypress01-121.
    3434--> You have 0 (hr) 60 (min).
    35 [tulaneID@cypress01-035 pp-1.6.4]$
     35--> Assigned Host List : /tmp/idev_nodes_file_tuhpc002
     36Last login: Wed Aug 21 15:56:37 2019 from cypress1.cm.cluster
     37[tulaneID@cypress01-121 ~]$
     38}}}
     39
     40==== For Workshop ====
     41If you use a temporary workshop account, in order to use only 2 cpu's per node and thus allow for sharing of nodes among many users, do this.
     42{{{
     43[tulaneID@cypress1 ~]$ idev -c 2
    3644}}}
    3745
    … …  
    3947
    4048{{{
    41 [tulaneID@cypress01-035 pp-1.6.4]$ module load R/3.2.4
    42 [tulaneID@cypress01-035 pp-1.6.4]$ module list
     49[tulaneID@cypress01-121 ~]$ module load R/3.2.4
     50[tulaneID@cypress01-121 ~]$ module list
    4351Currently Loaded Modulefiles:
    44   1) git/2.4.1           3) idev                5) R/3.2.4
    45   2) slurm/14.03.0       4) bbcp/amd64_rhel60
     52  1) slurm/14.03.0       3) bbcp/amd64_rhel60
     53  2) idev                4) R/3.2.4
    4654}}}
    4755
    … …  
    4957
    5058{{{
    51 [tulaneID@cypress01-035 pp-1.6.4]$R
     59[tulaneID@cypress01-121 ~]$R
    5260
    5361R version 3.2.4 (2016-03-10) -- "Very Secure Dishes"