Changes between Initial Version and Version 1 of cypress/ModuleCommand

Timestamp:

05/14/15 11:42:44 (9 years ago)

Author:

cmaggio

Comment:

migrated content from ccs wiki. NOTE: CONTENT STILL NEEDS UPDATING TO REFLECT CONFIGURATION OF CYPRESS

cypress/ModuleCommand

@@ +1 @@
+= Program:module =
+
+''module'' is a utility used to manage multiple compilers on a single system, as well as set environment variables for other programs and utilities.
+
+=== Available Modules ===
+The following command will list all available modules. Modules with names containing ''pgi, gnu, intel'' were built with those compilers respectively. 
+{{{
+[tulaneID@cypress1 ~]$ module avail
+
+-------------------------------------------------------- /cm/local/modulefiles --------------------------------------------------------
+cluster-tools/7.0                 ipmitool/1.8.13                   openldap
+cmd                               module-git                        openmpi/gcc/64/1.8.2-mlnx-ofed2
+dot                               module-info                       shared
+freeipmi/1.3.4                    mvapich2/gcc/64/2.0rc1-mlnx-ofed2 use.own
+intel/mic/sdk/3.3                 null                              version
+
+------------------------------------------------------- /cm/shared/modulefiles --------------------------------------------------------
+default-environment           fftw3/openmpi/open64/64/3.3.3 slurm/14.03.0
+fftw3/openmpi/gcc/64/3.3.3    gcc/4.8.2                     tulane/intel-psxe/2015
+
+------------------------------------------------------- /share/apps/modulefiles -------------------------------------------------------
+anaconda/2.1.0          gaussian09/d.01         metis/5.1.0             novoalign/3.02.11-mpich samtools/1.1
+boost/1.57.0            gcc/4.7.4               mosaik/2.2.3            openmpi/1.8.4           star/2.4.0i
+bowtie/1.1.1            hdf5/1.8.14             mpich/3.1.4             parmetis/4.0.3          sundials/2.5.0
+bowtie2/2.2.4           hdf5-parallel/1.8.14    ncbi-blast/2.2.30+      petsc/3.4.5             tinker/7.1.2
+cmake/3.0.2             idev                    netcdf/4.3.2            petsc/3.5.2             tophat/2.0.13
+diamond/0.6.12          intel-psxe/2015-update1 netcdf-cxx4/4.2.1       petsc/3.5.3             vtk/6.1.0
+eigen/3.2.4             matlab/r2013b           netcdf-fortran/4.4.1    R/3.1.2
+emacs/24.4              matlab/r2015a           novoalign/3.02.11       rsem/1.2.19
+}}}
+
+=== Loading & Unloading Modules ===
+This will load the Intel Parallel Studio XE which contains the Intel compiler suite:
+
+{{{[tulaneID@cypress1 ~]$ module load intel-psxe}}}
+
+To unload the same package:
+
+{{{[tulaneID@cypress1 ~]$ module unload intel-psxe}}}
+
+=== Listing Loaded Modules ===
+{{{
+[tulaneID@cypress1 ~]$ module load intel-psxe
+[tulaneID@cypress1 ~]$ module list
+Currently Loaded Modulefiles:
+  1) slurm/14.03.0             2) idev                      3) intel-psxe/2015-update1
+}}}
+
+
+=== using $HOME/.modulerc ===
+This file can be used to load or to define your own environment during each login. An example looks like this:
+
+{{{
+#%Module1.0
+module load matlab/R2013a
+}}}
+
+A .modulerc begins with the magic cookie, '#%Module'. A version number may be placed after this string. The current version is 1.0.
+
+If you want to set .modulerc to work for both "sphynx" and "ares", it is better to set like:
+
+{{{
+#%Module1.0
+if { $HOSTNAME == "sphynx.ccs.tulane.edu" } {
+ module load intel/12.1
+ module load openmpi-intel-ib/1.6
+ module load matlab/R2013a 
+}
+if { $HOSTNAME == "login-02-01" } {
+ module load intel/12.0
+ module load openmpi-intel-ib/1.5
+}
+}}}
+
+=== using $HOME/.bashrc ===
+This file can be used to load or to define your own environment during each login if you write the commands on .bashrc. An example looks like this:
+
+{{{
+# LOAD MODULE #
+# sets for sphynx 
+if [ "$HOSTNAME" == "sphynx.ccs.tulane.edu" ] ; then
+ module load intel/12.1
+ module load openmpi-intel-ib/1.6
+ module load matlab/R2013a 
+fi
+# sets for ares
+if [ "$HOSTNAME" == "login-02-01" ]; then
+  module load intel/9.1
+  module load openmpi-intel-ib/1.5
+  export MKLROOT="/usr/local/opt/intel/composerxe/mkl"
+fi
+}}}