| | 1 | = HPC Workshop 2015 = |
| | 2 | |
| | 3 | == Day 1 == |
| | 4 | |
| | 5 | === Introduction to Tulane computing resources === |
| | 6 | * [[cypress/workshopintro|High Performance Computing at Tulane]] |
| | 7 | |
| | 8 | === Working on a remote !Unix/Linux system === |
| | 9 | * [[cypress/SshUsage/|SSH, terminal software]] |
| | 10 | * [[cypress/BasicLinuxComands|Unix/Linux commands]] |
| | 11 | * [[cypress/FileEditingSoftware|File Editing Software]] |
| | 12 | * [[cypress/FileTransfer|File transfer to/from your desktop/laptop]] |
| | 13 | * [[cypress/WorkingOnClusters|Working on a remote Unix/Linux Cluster]] |
| | 14 | * [[cypress/ModuleCommand|Module command]] |
| | 15 | * [[cypress/using#SubmittingJobsonCypress|How to submit a job]] |
| | 16 | * [[cypress/using#SubmittingInteractiveJobs|Running interactive jobs (idev)]] |
| | 17 | |
| | 18 | === How to run a Matlab code on Cypress === |
| | 19 | * [[cypress/Matlab#RunningMATLABinteractively|Running Matlab interactively using idev]] |
| | 20 | * [[cypress/Matlab#RunningMATLABinabatchmode|Running Matlab jobs using SLURM scripts]] |
| | 21 | * [[cypress/Matlab#RunningMATLABinParallelwithMultithreads|Parallel Matlab]] |
| | 22 | |
| | 23 | === How to run R code on Cypress === |
| | 24 | * [[cypress/R|Running R on Cypress]] |
| | 25 | |
| | 26 | === How to run Python Cypress=== |
| | 27 | * [[cypress/Python|Running Python on Cypress]] |
| | 28 | |
| | 29 | |
| | 30 | |
| | 31 | == Day 2 == |
| | 32 | |
| | 33 | === Coding === |
| | 34 | * [[cypress/Programming|Programing in C/C++/Fortran]] |
| | 35 | * [[cypress/Programming/SpeedupScaling|Parallel Computing Overview]] |
| | 36 | * [[cypress/Programming/OpenMp|Shared Memory]] |
| | 37 | * [[cypress/Programming/Mpi|Distributed Memory]] |
| | 38 | |
| | 39 | === Version control === |
| | 40 | * [[cypress/svn|svn]] |
| | 41 | * [[cypress/git|git]] |
| | 42 | |
| | 43 | === Compilation, debugging, and optimization === |
| | 44 | * [[cypress/Programming/MakeFile|Makefiles]] |
| | 45 | * [[cypress/Programming/CodeDebugging|Code Debugging]] |
| | 46 | * [[cypress/Programming/CodeProfiling|Code Profiling]] |
| | 47 | * [[cypress/Programming/CodeDebugging#GDB|gdb]] |
| | 48 | * [[cypress/Programming/CodeDebugging#Valgrind|valgrind]] |
| | 49 | * [[cypress/Programming/CodeDebugging#IntelInspectorXE|Intel Parallel Studio XE (Inspector, Advisor, and Vtune)]] |
| | 50 | |
| | 51 | === Math Libraries === |
| | 52 | * [[BLAS]] |
| | 53 | * [[LAPACK]] |
| | 54 | * [[MKL]] |
| | 55 | |
| | 56 | === Intel’s Xeon Phi Coprocessor === |
| | 57 | * [[cypress/XeonPhi|Review of Hardware from previous day]] |
| | 58 | * [[cypress/XeonPhi#XeonPhiUsageModels|Three usage paradigms]] |
| | 59 | * [[cypress/XeonPhi|Programming considerations]] |
| | 60 | |
| | 61 | === Data Visualization === |
| | 62 | * [[cypress/VisIt|VisIt]] |
| | 63 | * [[Visualization Toolkit (VTK)]] |
