Changes between Version 4 and Version 5 of cypress/GNUparallel

Timestamp:

08/16/25 17:17:56 (9 hours ago)

Author:

fuji

Comment:

—

cypress/GNUparallel

@@ -28 +28 @@
 
 == Many Task Computing ==
-For example, you have many scripts to run,
+If you haven't done yet, download Samples by:
+{{{
+git clone https://hidekiCCS:@bitbucket.org/hidekiCCS/hpc-workshop.git
+}}}
+
+For example, you have many scripts in '''hpc-workshop/JobArray2''' to run,
 {{{
 [fuji@cypress1 JobArray2]$ ls
@@ -37 +42 @@
 To run all distributed over 4 cores,
 {{{
-[fuji@cypress1 JobArray2]$ parallel -j 4 sh ::: script??.sh
+#!/bin/bash
+#SBATCH --partition=defq        # Partition
+#SBATCH --qos=normal            # Quality of Service
+#SBATCH --job-name=GNU_Paralle  # Job Name
+#SBATCH --time=00:10:00         # WallTime
+#SBATCH --nodes=1               # Number of Nodes
+#SBATCH --ntasks-per-node=4     # Number of tasks 
+#SBATCH --cpus-per-task=1       # Number of processors per task OpenMP threads()
+#SBATCH --gres=mic:0            # Number of Co-Processors
+
+module load parallel
+
+export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
+
+parallel --record-env
+
+parallel --joblog log \
+        -j $SLURM_NTASKS \
+        sh ::: script??.sh
 }}}
+
 
 === Run Gnu Parallel in Slurm script ===