Changes between Version 1 and Version 2 of cypress/Cellranger


Ignore:
Timestamp:
04/05/21 17:43:40 (4 years ago)
Author:
cbaribault
Comment:

In cluster mode example, removed superfluous options —localmem and —localcores

Legend:

Unmodified
Added
Removed
Modified

  • cypress/Cellranger

    v1 v2  
    6565                 --fastqs=./indepth_C05_MissingLibrary_1_HL5G3BBXX,./indepth_C05_MissingLibrary_1_HNNWNBBXX \
    6666                 --jobmode=slurm \
    67                  --localmem=128 \
    68                  --localcores=20 \
    6967                 --maxjobs=8 \
    7068                 --jobinterval=1000
    … …  
    7876 
    7977This will take less than 6 hours on Cypress.
     78
     79Note: To avoid unnecessary runtime warnings in cluster mode, do not specify options --localmem and --localcores, since they only apply to local mode. See output from the command '''cellranger count -h''' for details.
     80