| | 1 | [[PageOutline]] |
| | 2 | = HPC Workshop 2019 = |
| | 3 | |
| | 4 | === 1. Introduction to Tulane computing resources === |
| | 5 | [https://crsc.tulane.edu/cypress-schematic/][[BR]] |
| | 6 | [https://crsc.tulane.edu/hardware-specifications/] |
| | 7 | |
| | 8 | === 2. Working on a remote !Unix/Linux system, Part I=== |
| | 9 | * [[cypress/SshUsage/|SSH, terminal software]] |
| | 10 | * [[cypress/BasicLinuxComands|Unix/Linux commands]] |
| | 11 | |
| | 12 | ''Break - Coffee & Refreshments Provided'' |
| | 13 | |
| | 14 | ---- |
| | 15 | |
| | 16 | === 3. Working on a remote !Unix/Linux system, Part II === |
| | 17 | * [[cypress/FileEditingSoftware|File Editing Software]] |
| | 18 | * [[cypress/FileTransfer|File transfer to/from your desktop/laptop]] |
| | 19 | * [[cypress/WorkingOnClusters|Working on a remote Unix/Linux Cluster]] |
| | 20 | |
| | 21 | === 4. Working on a remote !Unix/Linux system, Part III === |
| | 22 | * [[cypress/ModuleCommand|Module command]] |
| | 23 | * [[cypress/SlurmPractice|How to submit a job]] |
| | 24 | |
| | 25 | ''Break - Lunch Provided'' |
| | 26 | |
| | 27 | ---- |
| | 28 | |
| | 29 | === 5. Serial, Parallel, Array, Interactive jobs === |
| | 30 | * [[cypress/JobArrays|Job Arrays]] |
| | 31 | * [[cypress/JobDependency|Job Dependencies]] |
| | 32 | * [[cypress/using#SubmittingInteractiveJobs|Running interactive jobs (idev)]] |
| | 33 | * [[cypress/using#MPIJobs|Parallel Jobs : MPI]] |
| | 34 | * [[cypress/using#OpenMPJobs|Parallel Jobs : OpenMP]] |
| | 35 | * [[cypress/using#HybridJobs|Parallel Jobs : Hybrid]] |
| | 36 | |
| | 37 | === 6. How to run R code on Cypress === |
| | 38 | * [[cypress/R|Running R on Cypress]] |
| | 39 | * [[cypress/R#RunningRInteractively| Running R Interactively]] |
| | 40 | * [[cypress/R#RunningaRscriptinBatchmode|Running R with Batch Mode]] |
| | 41 | * [[cypress/R#InstallingRPackagesintouserhomedirectoryorlustresub-directory|Install Packages]] |
| | 42 | |
| | 43 | |
| | 44 | ''Afternoon Break'' |
| | 45 | |
| | 46 | ---- |
| | 47 | |
| | 48 | === 7. How to run Python Cypress=== |
| | 49 | * [[cypress/Python|Running Python on Cypress]] |
| | 50 | * [[cypress/Python#RunningPythonInteractively|Running Python Interactively]] |
| | 51 | * [[cypress/Python#RunningaPythonscriptinBatchmode|Running Python with Batch Mode]] |
| | 52 | * [[cypress/Python#JupyterNotebook|Jupyter Notebook]] |
| | 53 | * [[cypress/AnacondaInstallPackage|Install Packages to Anaconda Python]] |
| | 54 | |
| | 55 | Download Samples by: |
| | 56 | |
| | 57 | {{{svn co file:///home/fuji/repos/workshop ./workshop}}} |
| | 58 | |
| | 59 | Checkout Sample Programs onto local machine, (linux shell) |
| | 60 | |
| | 61 | {{{svn co svn+ssh://USERID@cypress1.tulane.edu/home/fuji/repos/workshop ./workshop}}} |
| | 62 | |
