= Program:module = '''module''' is a utility used to manage multiple compilers on a single system, as well as set environment variables for other programs and utilities. === Available Modules === The following command will list all available modules. {{{ [tulaneID@cypress1 ~]$ module avail -------------------------------------------------------- /cm/local/modulefiles -------------------------------------------------------- cluster-tools/7.0 ipmitool/1.8.13 openldap cmd module-git openmpi/gcc/64/1.8.2-mlnx-ofed2 dot module-info shared freeipmi/1.3.4 mvapich2/gcc/64/2.0rc1-mlnx-ofed2 use.own intel/mic/sdk/3.3 null version ------------------------------------------------------- /cm/shared/modulefiles -------------------------------------------------------- acml/gcc/64/5.3.1 cuda60/profiler/6.0.37 lapack/gcc/64/3.5.0 acml/gcc/fma4/5.3.1 cuda60/toolkit/6.0.37 lapack/open64/64/3.5.0 acml/gcc/mp/64/5.3.1 default-environment mpich/ge/gcc/64/3.1 acml/gcc/mp/fma4/5.3.1 fftw2/openmpi/gcc/64/double/2.1.5 mpich/ge/open64/64/3.1 acml/gcc-int64/64/5.3.1 fftw2/openmpi/gcc/64/float/2.1.5 mpiexec/0.84_432 acml/gcc-int64/fma4/5.3.1 fftw2/openmpi/open64/64/double/2.1.5 mvapich/gcc/64/1.2rc1 acml/gcc-int64/mp/64/5.3.1 fftw2/openmpi/open64/64/float/2.1.5 mvapich/open64/64/1.2rc1 acml/gcc-int64/mp/fma4/5.3.1 fftw3/openmpi/gcc/64/3.3.3 mvapich2/gcc/64/2.0b acml/open64/64/5.3.1 fftw3/openmpi/open64/64/3.3.3 mvapich2/open64/64/2.0b acml/open64/fma4/5.3.1 gcc/4.8.2 netcdf/gcc/64/4.3.1.1 acml/open64/mp/64/5.3.1 globalarrays/openmpi/gcc/64/5.3 netcdf/open64/64/4.3.1.1 acml/open64/mp/fma4/5.3.1 globalarrays/openmpi/open64/64/5.3 netperf/2.6.0 acml/open64-int64/64/5.3.1 hadoop/HAL/Cloudera/2.3.0-cdh5.1.2 open64/4.5.2.1 acml/open64-int64/fma4/5.3.1 hdf5/1.6.10 openblas/dynamic/0.2.8 acml/open64-int64/mp/64/5.3.1 hdf5_18/1.8.12 openmpi/gcc/64/1.8.1 acml/open64-int64/mp/fma4/5.3.1 hive/HAL/Cloudera/1.2.0-bin openmpi/open64/64/1.8.1 blacs/mpichge/gcc/64/1.1patch03 hpl/2.1 pbspro/12.2.1.140292 blacs/openmpi/gcc/64/1.1patch03 hwloc/1.8.1 pig/HAL/Cloudera/0.12.0-cdh5.1.2 blacs/openmpi/open64/64/1.1patch03 intel/compiler/64/14.0/2013_sp1.3.174 scalapack/gcc/64/1.8.0 blas/gcc/64/1 intel-cluster-checker/2.1.2 scalapack/open64/64/1.8.0 blas/open64/64/1 intel-cluster-runtime/ia32/3.6 sge/2011.11p1 bonnie++/1.97.1 intel-cluster-runtime/intel64/3.6 slurm/14.03.0 cmgui/7.0 intel-cluster-runtime/mic/3.6 spark/HAL/Cloudera/1.4.0-bin-hadoop2.3 cuda60/blas/6.0.37 intel-tbb-oss/ia32/42_20140601oss torque/4.2.6.1 cuda60/fft/6.0.37 intel-tbb-oss/intel64/42_20140601oss tulane/intel-psxe/2015 cuda60/nsight/6.0.37 iozone/3_420 ------------------------------------------------------- /share/apps/modulefiles ------------------------------------------------------- anaconda/2.1.0 fftw/2.1.5/single metis/5.1.0 plink/1.07 bbcp/amd64_rhel60 fftw/3.3.4 mosaik/2.2.3 python/2.7.10 berkeleygw/1.1-beta2 gcc/4.7.4 mpich/3.1.4 R/3.1.2 boost/1.57.0 git/2.4.1 ncbi-blast/2.2.30+ rsem/1.2.19 bowtie/1.1.1 gnuplot/5.0.1 netcdf/4.3.2 samtools/0.1.19 bowtie2/2.2.4 hdf5/1.8.14 netcdf-cxx4/4.2.1 samtools/1.1 cmake/3.0.2 hdf5-parallel/1.8.14 netcdf-fortran/4.4.1 star/2.4.0i diamond/0.6.12 ibamr/0.1-rc1 openmpi/1.8.4 sundials/2.5.0 eigen/3.2.4 idev parmetis/4.0.3 tinker/7.1.2 emacs/24.4 intel-psxe/2015-update1 petsc/3.4.5 tophat/2.0.13 espresso/5.1.2 matlab/r2013b petsc/3.5.2 visit/2.9.2 fftw/2.1.5/double(default) matlab/r2015a petsc/3.5.3 vtk/6.1.0 }}} === Loading & Unloading Modules === This will load the Intel Parallel Studio XE which contains the Intel compiler suite: {{{ [tulaneID@cypress1 ~]$ module load intel-psxe }}} To unload the same package: {{{ [tulaneID@cypress1 ~]$ module unload intel-psxe }}} === Listing Loaded Modules === {{{ [tulaneID@cypress1 ~]$ module load intel-psxe [tulaneID@cypress1 ~]$ module list Currently Loaded Modulefiles: 1) slurm/14.03.0 2) idev 3) intel-psxe/2015-update1 }}} === using $HOME/.modulerc === This file can be used to load or to define your own environment during each login. An example looks like this: {{{ #%Module1.0 module load matlab/R2013a }}} A .modulerc begins with the magic cookie, '#%Module'. A version number may be placed after this string. The current version is 1.0. If you want to set .modulerc to work for both "sphynx" and "ares", it is better to set like: {{{ #%Module1.0 if { $HOSTNAME == "sphynx.ccs.tulane.edu" } { module load intel/12.1 module load openmpi-intel-ib/1.6 module load matlab/R2013a } if { $HOSTNAME == "cypress1" } { module load intel/12.0 module load openmpi-intel-ib/1.5 } }}} === Next Section === [[cypress/using|Job Submissions]]