= HPC Workshop 2015 = NOTE: This is an archived version of the content presented in the 2015 HPC workshop and may not represent the most up-to-date practices. == Day 1 == === Introduction to Tulane computing resources === * [[IntroToHpc2015/workshopintro|High Performance Computing at Tulane]] === Working on a remote !Unix/Linux system === * [[IntroToHpc2015/SshUsage/|SSH, terminal software]] * [[IntroToHpc2015/BasicLinuxComands|Unix/Linux commands]] * [[IntroToHpc2015/FileEditingSoftware|File Editing Software]] * [[IntroToHpc2015/FileTransfer|File transfer to/from your desktop/laptop]] * [[IntroToHpc2015/WorkingOnClusters|Working on a remote Unix/Linux Cluster]] * [[IntroToHpc2015/ModuleCommand|Module command]] * [[IntroToHpc2015/using#SubmittingJobsonCypress|How to submit a job]] * [[IntroToHpc2015/using#SubmittingInteractiveJobs|Running interactive jobs (idev)]] === How to run a Matlab code on Cypress === * [[IntroToHpc2015/Matlab#RunningMATLABinteractively|Running Matlab interactively using idev]] * [[IntroToHpc2015/Matlab#RunningMATLABinabatchmode|Running Matlab jobs using SLURM scripts]] * [[IntroToHpc2015/Matlab#RunningMATLABinParallelwithMultithreads|Parallel Matlab]] === How to run R code on Cypress === * [[IntroToHpc2015/R|Running R on Cypress]] === How to run Python Cypress=== * [[IntroToHpc2015/Python|Running Python on Cypress]] == Day 2 == === Coding === * [[IntroToHpc2015/Programming|Programing in C/C++/Fortran]] * [[IntroToHpc2015/Programming/SpeedupScaling|Parallel Computing Overview]] * [[IntroToHpc2015/Programming/OpenMp|Shared Memory]] * [[IntroToHpc2015/Programming/Mpi|Distributed Memory]] === Version control === * [[cypress/svn|svn]] * [[cypress/git|git]] * [[IntroToHpc2015/svn|svn]] * [[IntroToHpc2015/git|git]] === Compilation, debugging, and optimization === * [[cypress/Programming/MakeFile|Makefiles]] * [[cypress/Programming/CodeDebugging|Code Debugging]] * [[cypress/Programming/CodeProfiling|Code Profiling]] * [[cypress/Programming/CodeDebugging#GDB|gdb]] * [[cypress/Programming/CodeDebugging#Valgrind|valgrind]] * [[cypress/Programming/CodeDebugging#IntelInspectorXE|Intel Parallel Studio XE (Inspector, Advisor, and Vtune)]] * [[IntroToHpc2015/Programming/MakeFile|Makefiles]] * [[IntroToHpc2015/Programming/CodeDebugging|Code Debugging]] * [[IntroToHpc2015/Programming/CodeProfiling|Code Profiling]] * [[IntroToHpc2015/Programming/CodeDebugging#GDB|gdb]] * [[IntroToHpc2015/Programming/CodeDebugging#Valgrind|valgrind]] * [[IntroToHpc2015/Programming/CodeDebugging#IntelInspectorXE|Intel Parallel Studio XE (Inspector, Advisor, and Vtune)]] === Math Libraries === * [[BLAS]] * [[cypress/LAPACK|LAPACK]] * [[cypress/MKL|MKL]] * [[IntroToHpc2015/BLAS]] * [[IntroToHpc2015/LAPACK|LAPACK]] * [[IntroToHpc2015/MKL|MKL]] === Intel’s Xeon Phi Coprocessor === * [[cypress/XeonPhi|Review of Hardware from previous day]] * [[cypress/XeonPhi#XeonPhiUsageModels|Three usage paradigms]] * [[cypress/XeonPhi|Programming considerations]] * [[IntroToHpc2015/XeonPhi|Review of Hardware from previous day]] * [[IntroToHpc2015/XeonPhi#XeonPhiUsageModels|Three usage paradigms]] * [[IntroToHpc2015/XeonPhi|Programming considerations]] === Data Visualization === * [[cypress/VisIt|VisIt]] * [[cypress/Visualization Toolkit (VTK)|Visualization Toolkit (VTK)]] * [[IntroToHpc2015/VisIt|VisIt]] * [[IntroToHpc2015/Visualization Toolkit (VTK)|Visualization Toolkit (VTK)]]