= HPC Workshop 2015 =

== Day 1 ==

=== Introduction to Tulane computing resources ===
* [[IntroToHpc2015/workshopintro|High Performance Computing at Tulane]]

=== Working on a remote !Unix/Linux system ===
* [[IntroToHpc2015/SshUsage/|SSH, terminal software]]
* [[IntroToHpc2015/BasicLinuxComands|Unix/Linux commands]]
* [[IntroToHpc2015/FileEditingSoftware|File Editing Software]]
* [[IntroToHpc2015/FileTransfer|File transfer to/from your desktop/laptop]]
* [[IntroToHpc2015/WorkingOnClusters|Working on a remote Unix/Linux Cluster]]
* [[IntroToHpc2015/ModuleCommand|Module command]]
* [[IntroToHpc2015/using#SubmittingJobsonCypress|How to submit a job]]
* [[IntroToHpc2015/using#SubmittingInteractiveJobs|Running interactive jobs (idev)]]

=== How to run a Matlab code on Cypress ===
* [[cypress/Matlab#RunningMATLABinteractively|Running Matlab interactively using idev]]
* [[cypress/Matlab#RunningMATLABinabatchmode|Running Matlab jobs using SLURM scripts]]
* [[cypress/Matlab#RunningMATLABinParallelwithMultithreads|Parallel Matlab]]

* [[IntroToHpc2015/Matlab#RunningMATLABinteractively|Running Matlab interactively using idev]]
* [[IntroToHpc2015/Matlab#RunningMATLABinabatchmode|Running Matlab jobs using SLURM scripts]]
* [[IntroToHpc2015/Matlab#RunningMATLABinParallelwithMultithreads|Parallel Matlab]]
=== How to run R code on Cypress ===
* [[cypress/R|Running R on Cypress]]
* [[IntroToHpc2015/R|Running R on Cypress]]

=== How to run Python Cypress===
* [[cypress/Python|Running Python on Cypress]]
* [[IntroToHpc2015/Python|Running Python on Cypress]]


== Day 2 ==

=== Coding ===
* [[cypress/Programming|Programing in C/C++/Fortran]]
* [[cypress/Programming/SpeedupScaling|Parallel Computing Overview]]
* [[cypress/Programming/OpenMp|Shared Memory]] 
* [[cypress/Programming/Mpi|Distributed Memory]]

* [[IntroToHpc2015/Programming|Programing in C/C++/Fortran]]
* [[IntroToHpc2015/Programming/SpeedupScaling|Parallel Computing Overview]]
* [[IntroToHpc2015/Programming/OpenMp|Shared Memory]] 
* [[IntroToHpc2015/Programming/Mpi|Distributed Memory]]

=== Version control ===
* [[cypress/svn|svn]]
* [[cypress/git|git]]

* [[IntroToHpc2015/svn|svn]]
* [[IntroToHpc2015/git|git]]

=== Compilation, debugging, and optimization ===
* [[cypress/Programming/MakeFile|Makefiles]]
* [[cypress/Programming/CodeDebugging|Code Debugging]]
* [[cypress/Programming/CodeProfiling|Code Profiling]]
* [[cypress/Programming/CodeDebugging#GDB|gdb]]
* [[cypress/Programming/CodeDebugging#Valgrind|valgrind]]
* [[cypress/Programming/CodeDebugging#IntelInspectorXE|Intel Parallel Studio XE (Inspector, Advisor, and Vtune)]]

* [[IntroToHpc2015/Programming/MakeFile|Makefiles]]
* [[IntroToHpc2015/Programming/CodeDebugging|Code Debugging]]
* [[IntroToHpc2015/Programming/CodeProfiling|Code Profiling]]
* [[IntroToHpc2015/Programming/CodeDebugging#GDB|gdb]]
* [[IntroToHpc2015/Programming/CodeDebugging#Valgrind|valgrind]]
* [[IntroToHpc2015/Programming/CodeDebugging#IntelInspectorXE|Intel Parallel Studio XE (Inspector, Advisor, and Vtune)]]
=== Math Libraries ===
* [[BLAS]]
* [[cypress/LAPACK|LAPACK]]
* [[cypress/MKL|MKL]]

* [[IntroToHpc2015/BLAS]]
* [[IntroToHpc2015/LAPACK|LAPACK]]
* [[IntroToHpc2015/MKL|MKL]]
=== Intel’s Xeon Phi Coprocessor ===
* [[cypress/XeonPhi|Review of Hardware from previous day]]
* [[cypress/XeonPhi#XeonPhiUsageModels|Three usage paradigms]]
* [[cypress/XeonPhi|Programming considerations]]

* [[IntroToHpc2015/XeonPhi|Review of Hardware from previous day]]
* [[IntroToHpc2015/XeonPhi#XeonPhiUsageModels|Three usage paradigms]]
* [[IntroToHpc2015/XeonPhi|Programming considerations]]

=== Data Visualization ===
* [[cypress/VisIt|VisIt]]
* [[cypress/Visualization Toolkit (VTK)|Visualization Toolkit (VTK)]]

* [[IntroToHpc2015/VisIt|VisIt]]
* [[IntroToHpc2015/Visualization Toolkit (VTK)|Visualization Toolkit (VTK)]]