Changes between Version 6 and Version 7 of Matlab-Slurm


Ignore:
Timestamp:
01/18/23 11:46:18 (22 months ago)
Author:
fuji
Comment:

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  • Matlab-Slurm

    v6 v7  
    3434
    3535=== Prerequisites ===
    36 * You need to have MATLAB installed on your laptop/desktop that must be the same version of MATLAB on Cypress (r2020a or later).
     36* You need to have MATLAB installed on your laptop/desktop which must be the same version of MATLAB on Cypress (r2020a or later).
    3737* You must have the Matlab '''Parallel Computing Toolbox''' installed.  To see what toolboxes are installed, type the '''ver''' command in the Matlab command window.  You should see '''Parallel Computing Toolbox''' listed.
    3838* Make sure you have an account on Cypress and can ''ssh'' to Cypress from your local laptop/desktop.
    3939
    4040=== Installation and Configuration ===
    41 In order to submit MATLAB jobs to Cypress from your laptop/desktop, you need to install a custom Matlab plugin scripts that are configured to interact with the Slurm job scheduler on Cypress.  Use the link below to download the script package to your laptop/desktop.
     41In order to submit MATLAB jobs to Cypress from your laptop/desktop, you need to install custom Matlab plugin scripts that are configured to interact with the Slurm job scheduler on Cypress.  Use the link below to download the script package to your laptop/desktop.
    4242
    4343[https://wiki.hpc.tulane.edu/trac/attachment/wiki/Matlab-Slurm/TU.nonshared.R2021a.zip TU.nonshared.R2021a.zip]
    … …  
    4949}}}
    5050
    51 See [https://www.mathworks.com/help/matlab/ref/userpath.html here] to view or change default user work folder on MATLAB.
     51See [https://www.mathworks.com/help/matlab/ref/userpath.html here] to view or change the default user work folder on MATLAB.
    5252
    5353
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    6767}}}
    6868
    69 Submission to the Cypress requires SSH credentials.  You will be prompted for your ssh username and password or identity file (private key).  The username and location of the private key will be stored in MATLAB for future sessions.
     69Submission to Cypress requires SSH credentials.  You will be prompted for your ssh username and password or identity file (private key).  The username and location of the private key will be stored in MATLAB for future sessions.
    7070
    7171
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    140140
    141141== INTERACTIVE JOBS - MATLAB client on Cypress ==
     142 Note this is for '''MATLAB client on Cypress'''.
     143
    142144To run an interactive pool job on the cluster, continue to use parpool as you’ve done before.
    143145{{{
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    198200}}}
    199201
     202*** If you get a pop-up window 'Use identity file to login to cypress.tulane.edu', press 'NO' ***
     203
    200204{{{
    201205>> % Wait for the job to finish. 
    … …  
    297301>> myjob = batch(c,'parallel_example','pool', 8, 'AutoAddClientPath',false)
    298302}}}
     303
     304*** If you get a pop-up window 'Use identity file to login to cypress.tulane.edu', press 'NO' ***
    299305
    300306{{{