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cypress/SingularityRecipes: [[PageOutline]] = Build Singularity Containers from Recipes = ...: ... * You can build a Singularity container from a recipe on [https://cloud.sylabs.io/builder Sylabs Cloud]. * On Cypress, use the provided '''singularity pull...''' command to construct the image file from the cloud such as the following, substituting your chosen values for '''sylabsID''', '''myColl ...; By Carl Baribault — 10/20/2026 01:32:56 PM
cypress/Matlab: [[PageOutline]] = MATLAB = MATLAB (matrix laboratory) is a ...: ... {{{ git clone https://gitlab.tulane.edu/fuji/hpc-workshop.git }}} Start an interactive session, {{{#!bash [fuji@cypress1 ~]$ idev --partition=centos7 Requesting 1 node(s) task(s) to normal queue of centos7 partition 1 task(s)/node, 20 cpu(s)/tas ...; By fuji — 10/20/2026 11:07:19 AM
cypress/RunningRWithSingularity: [[PageOutline]] = Running R using Singularity on Cypress = Besides ...: ... Running R using Singularity on Cypress = Besides [[https://hub.docker.com | Dockerhub ]], the [[https://rocker-project.org/ | Rocker Project]] is a website established to provide docker containers in the form of docker files specifically for the R environment. In order to use any of thos ...; By Carl Baribault — 10/20/2026 10:25:20 AM
cypress/SshUsage: [[PageOutline]] = Terminals and Shells = ...: ... ==== Install OpenSSH ==== To install OpenSSH, see [[https://docs.microsoft.com/en-us/windows-server/administration/openssh/openssh_install_firstuse | Install OpenSSH for Windows]]. Then verify '''ssh''' via [#Evaluateyoursshinstallation Evaluate...] above for use with Cypress. === Windows ...; By Carl Baribault — 10/18/2026 10:04:19 PM
Workshops/JobCheckpointing: [[PageOutline]] = HPC Workshop Fall 2026 = = Module 8 of 8 - Job ...: ... (See "backfill scheduling" in [https://slurm.schedmd.com/sched_config.html|SLURM Scheduling Configuration Guide]. * '''More checkpointed jobs can run simultaneously''' due to strict limits enforced by Cypress, LONI, and most other production clusters. * See '''--qos=n ...; By Carl Baribault — 10/15/2026 05:21:43 PM
Workshops/HowToRunMatlab2025October: [[PageOutline]] = HPC Workshop Fall 2026 = = Module 5 of 8 - How to ...: ... ng language and numeric computing environment developed by [https://www.mathworks.com/ MathWorks]. MATLAB allows matrix manipulations, plotting of functions and data, implementation of algorithms, creation of user interfaces, and interfacing with programs written in other languages. Tulane’s expa ...; By Carl Baribault — 10/15/2026 05:20:29 PM
Workshops/HowToRunPythonOnCypress2025August: [[PageOutline]] = HPC Workshop Fall 2026 = = Module 4 of 8 - How to ...: ... {{{ git clone https://gitlab.tulane.edu/fuji/hpc-workshop.git }}} == What is Python? == Python is an interpreted, object-oriented, high-level programming language with dynamic semantics. Its high-level built-in data structures, combined with dynamic ...; By Carl Baribault — 10/15/2026 05:20:07 PM
Workshops/IntroToMulti-Processing2025August: [[PageOutline]] = HPC Workshop Fall 2026 = = Module 2 of 8 - ...: ... = Parallel Computing == * [https://wiki.hpc.tulane.edu/trac/wiki/Workshops/IntroToHpc2015/Programming/SpeedupScaling Overview] * A multi-core processor is a single computing component with two or more independent actual central processing units (called "cores"), whi ...; By Carl Baribault — 10/15/2026 05:18:34 PM
Workshops/IntroToHpc2025August: [[PageOutline]] = HPC Workshop Fall 2026 = = Module 1 of 8 - ...: ... [https://it.tulane.edu/technology-delivery] * Cypress schematic and fast network [https://crsc.tulane.edu/cypress-schematic/] * Cypress hardware [https://crsc.tulane.edu/hardware-specifications/] * Why use HPC? [https://it.tulane.edu/tech ...; By Carl Baribault — 10/15/2026 03:18:09 PM
cypress/GlobusInBarchJob: = Example Pipeline for Data Transfer Using Globus and Computation in ...: ... ''log in to Globus with the command line tool once''', see [https://wiki.hpc.tulane.edu/trac/wiki/cypress/Globus#FileTransferwithGlobusCommandlineTools here]. == Scripts == There are three scripts. === Job Submission Script === '''submitJob.sh''' {{{ # # Pipeline for Data Transfer Using Glo ...; By fuji — 09/21/2026 09:10:03 AM

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